Prototypes and Tools
COSBI transforms ideas into software prototypes, which can be used by a large community of scientists
As part of our research efforts, we develop state-of-the-art computational tools to build up a biology pipeline encompassing data extraction and integration, biomarker identification, pathway analysis and modeling and simulation. All our prototypes are supported by specific publications and by their applications in different contexts. See case studies
Our software
VisualSHIELD
VisualSHIELD is an open-source, extensible web interface that simultaneously provides a standardized deployment of the DataSHIELD infrastructure and a graphical user interface to dsSwissKnife and other...
QSPcc
New technologies have helped acquire even more data and knowledge, pushing the size and complexity of mathematical models to describe an ever increasing level of detail. This new generation of richer...
BioMedical Knowledge Extraction
Biomedical event extraction has been a long-researched topic exhibiting pretty hard-to-tackle characteristics preventing existing solutions to exit the labs. The language understanding method described...
SCUDO
SCUDO (Signature-based Clustering for Diagnostic Purposes) is a rank-based method for the analysis of gene expression profiles for diagnostic and classification purposes. It is based on the identification...
NASFinder
The Network Activity Score Finder (NASFinder) is a web service for topological and functional analysis of sub-networks connecting an omics-determined module. The web application requires a list of molecules...
