Prototypes and Tools
COSBI transforms ideas into software prototypes, which can be used by a large community of scientists
As part of our research efforts, we develop state-of-the-art computational tools to build up a biology pipeline encompassing data extraction and integration, biomarker identification, pathway analysis and modeling and simulation. All our prototypes are supported by specific publications and by their applications in different contexts. See case studies
Our software
RSSA
Rejection-based Stochastic Simulation Algorithm (RSSA) is an exact and efficient simulation method for (large-scale) biochemical reactions and tailored for time-consuming propensity function e.g. Michaelis...
SICOMPRE
Simulation-based, qualitative and quantitative prediction of protein complexes. Integrating different datasets, like protein-protein interactions, domain-domain interactions and protein abundance, SICOMPRE...
HSimulator
Multithread hybrid stochastic/deterministic simulation of biochemical reaction networks. HSimulator is an optimized, multi-threaded Java simulator compatible with Java 6.0 or higher versions. The simulator...